Man pages for hicrep
Measuring the reproducibility of Hi-C data

depth.adjSequencing depth adjustment
get.scccalculate the stratum-adjusted correlation coefficient
HiCR1HiCR1
HiCR2HiCR2
hicrep-packageHiCRep pipeline calculates reproducibility of Hi-C...
htrainTrain the smoothing parameter (neighborhood size).
MatToVecConvert the HiC matrix format to vector format
prepPre-processing the Hi-C matrices
smoothMatsmooth the Hi-C matrix with mean filter
vstranVariance stablization transformation
hicrep documentation built on Nov. 17, 2017, 8:50 a.m.