HiCR2: HiCR2
In hicrep: Measuring the reproducibility of Hi-C data
Description
Usage
Format
References
Description
A Hi-C matrix in the format of N*(3+N),
the additional first three columns contains the chromosome
information and coordinates of interaction bins. First is
chromosome name, the second and third are the mid-points of
the contacting bins.
Usage
1
Format
An object of class data.frame with 52 rows and 55 columns.
References
HiCRep: assessing the reproducibility of Hi-C
data using a stratum-adjusted correlation coefficient.
Tao Yang, Feipeng Zhang, Galip Gurkan Yardimci, Ross C Hardison,
William Stafford Noble, Feng Yue, Qunhua Li.
bioRxiv 101386; doi: https://doi.org/10.1101/101386.
hicrep documentation built on April 28, 2020, 7:51 p.m.
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Description Usage Format References
Description
A Hi-C matrix in the format of N*(3+N), the additional first three columns contains the chromosome information and coordinates of interaction bins. First is chromosome name, the second and third are the mid-points of the contacting bins.
Usage
1 |
Format
An object of class data.frame with 52 rows and 55 columns.
References
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient. Tao Yang, Feipeng Zhang, Galip Gurkan Yardimci, Ross C Hardison, William Stafford Noble, Feng Yue, Qunhua Li. bioRxiv 101386; doi: https://doi.org/10.1101/101386.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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