HiCR2: HiCR2

Description Usage Format References


A Hi-C matrix in the format of N*(3+N), the additional first three columns contains the chromosome information and coordinates of interaction bins. First is chromosome name, the second and third are the mid-points of the contacting bins.




An object of class data.frame with 52 rows and 55 columns.


HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient. Tao Yang, Feipeng Zhang, Galip Gurkan Yardimci, Ross C Hardison, William Stafford Noble, Feng Yue, Qunhua Li. bioRxiv 101386; doi: https://doi.org/10.1101/101386.

hicrep documentation built on April 28, 2020, 7:51 p.m.