abnormUM: Sample matrix
In hummingbird: Bayesian Hidden Markov Model for the detection of differentially methylated regions
Description
Usage
Details
Source
Examples
Description
A matrix containing the unmethylated read count data of the case group.
It is part of the sample dataset exampleHummingbird.
Usage
1
Details
Each column of the matrix represents a replicate and each row represents
a CpG position.
Source
Chen et al. (2017) Global misregulation of genes largely uncoupled to DNA
methylome epimutations characterizes a congenital overgrowth syndrome.
Scientific Reports 7, 12667
The raw FASTQ files of the WGBS experiment from this study are publicly
available at Gene Expression Omnibus (GEO) database with accession no. GSE93775.
Examples
1
2
hummingbird documentation built on April 18, 2021, 6 p.m.
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Description Usage Details Source Examples
Description
A matrix containing the unmethylated read count data of the case group. It is part of the sample dataset exampleHummingbird.
Usage
1 |
Details
Each column of the matrix represents a replicate and each row represents a CpG position.
Source
Chen et al. (2017) Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome. Scientific Reports 7, 12667
The raw FASTQ files of the WGBS experiment from this study are publicly available at Gene Expression Omnibus (GEO) database with accession no. GSE93775.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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