exampleSECase: Sample input data
In hummingbird: Bayesian Hidden Markov Model for the detection of differentially methylated regions
Description
Usage
Details
Source
Examples
Description
A SummarizedExperiment object containing the input data for the case group.
It is part of the sample dataset exampleHummingbird.
Usage
1
Details
It contains the two assays: abnormM, abnormUM and the CpG position
information: pos.
Source
Chen et al. (2017) Global misregulation of genes largely uncoupled to DNA
methylome epimutations characterizes a congenital overgrowth syndrome.
Scientific Reports 7, 12667
The raw FASTQ files of the WGBS experiment from this study are publicly
available at Gene Expression Omnibus (GEO) database with accession no. GSE93775.
Examples
1
2
3
library(SummarizedExperiment)
data(exampleHummingbird)
exampleSECase
hummingbird documentation built on April 18, 2021, 6 p.m.
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Description Usage Details Source Examples
Description
A SummarizedExperiment object containing the input data for the case group. It is part of the sample dataset exampleHummingbird.
Usage
1 |
Details
It contains the two assays: abnormM, abnormUM and the CpG position information: pos.
Source
Chen et al. (2017) Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome. Scientific Reports 7, 12667
The raw FASTQ files of the WGBS experiment from this study are publicly available at Gene Expression Omnibus (GEO) database with accession no. GSE93775.
Examples
1 2 3 | library(SummarizedExperiment)
data(exampleHummingbird)
exampleSECase
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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