iPAC: Identification of Protein Amino acid Clustering

Share:

iPAC is a novel tool to identify somatic amino acid mutation clustering within proteins while taking into account protein structure.

Author
Gregory Ryslik, Hongyu Zhao
Date of publication
None
Maintainer
Gregory Ryslik <gregory.ryslik@yale.edu>
License
GPL-2
Version
1.18.0

View on Bioconductor

Man pages

ClusterFind
ClusterFind
get.AASeq
get.AASeq
get.AlignedPositions
get.AlignedPositions
get.Positions
get.Positions
get.Remapped.Order
get.Remapped.Order
get.SingleLetterCode
get.SingleLetterCode
iPAC-package
Identification of Protein Amino acid mutation Clustering
KRAS.Mutations
KRAS.Mutations
nmc
nmc
PIK3CA.Mutations
PIK3CA.Mutations
Plot.Protein.Linear
Plot.Protein.Linear

Files in this package

iPAC/DESCRIPTION
iPAC/NAMESPACE
iPAC/R
iPAC/R/ClusterFind.R
iPAC/R/LinearRemapperMain.R
iPAC/R/MDSRemapperMain.R
iPAC/R/MatrixInsert.R
iPAC/R/Plot.Protein.Linear.R
iPAC/R/SetTextContrastColor.R
iPAC/R/calcdistance.R
iPAC/R/calcorder.R
iPAC/R/difforder0.R
iPAC/R/difforder1.R
iPAC/R/get.AASeq.R
iPAC/R/get.AlignedPositions.R
iPAC/R/get.CIFSequence.Aligned.R
iPAC/R/get.CIFSequence.R
iPAC/R/get.Positions.R
iPAC/R/get.Remapped.Order.R
iPAC/R/get.SingleLetterCode.R
iPAC/R/nmc.R
iPAC/R/plotLinear.R
iPAC/R/plotMDS.R
iPAC/R/rangestat.R
iPAC/R/sortpositions.R
iPAC/build
iPAC/build/vignette.rds
iPAC/data
iPAC/data/KRAS.Mutations.rda
iPAC/data/PIK3CA.Mutations.rda
iPAC/inst
iPAC/inst/NEWS.Rd
iPAC/inst/doc
iPAC/inst/doc/iPAC.R
iPAC/inst/doc/iPAC.Rnw
iPAC/inst/doc/iPAC.pdf
iPAC/man
iPAC/man/ClusterFind.Rd
iPAC/man/KRAS.Mutations.Rd
iPAC/man/PIK3CA.Mutations.Rd
iPAC/man/Plot.Protein.Linear.Rd
iPAC/man/get.AASeq.Rd
iPAC/man/get.AlignedPositions.Rd
iPAC/man/get.Positions.Rd
iPAC/man/get.Remapped.Order.Rd
iPAC/man/get.SingleLetterCode.Rd
iPAC/man/iPAC-package.Rd
iPAC/man/nmc.Rd
iPAC/vignettes
iPAC/vignettes/FakeProtein2.jpg
iPAC/vignettes/iPAC-Example6.pdf
iPAC/vignettes/iPAC-Example7.pdf
iPAC/vignettes/iPAC.Rnw
iPAC/vignettes/refs.bib