inSilicoMerging: Collection of Merging Techniques for Gene Expression Data

Collection of techniques to remove inter-study bias when combining gene expression data originating from different studies.

Author
Jaro Vanderheijden [ctb], Quentin De Clerck [ctb], Jonatan Taminau [cre]
Date of publication
None
Maintainer
InSilico DB <support@insilicodb.com>
License
GPL-2
Version
1.15.0
URLs

View on Bioconductor

Man pages

inSilicoMerging-package
Collection of Merging Techniques for Gene Expression Data.
merge
General method to merge different ExpressionSets
plotGeneWiseBoxPlot
Create gene-wise boxplot from (merged) ExpressionSet
plotMDS
Create double-labeled MDS plot from (merged) ExpressionSet
plotRLE
Create RLE plot from (merged) ExpressionSet

Files in this package

inSilicoMerging/DESCRIPTION
inSilicoMerging/NAMESPACE
inSilicoMerging/NEWS
inSilicoMerging/R
inSilicoMerging/R/color.R
inSilicoMerging/R/merge.R
inSilicoMerging/R/mergeBMC.R
inSilicoMerging/R/mergeCOMBAT.R
inSilicoMerging/R/mergeGENENORM.R
inSilicoMerging/R/mergeNONE.R
inSilicoMerging/R/mergeXPN.R
inSilicoMerging/R/plotGeneWiseBoxPlot.R
inSilicoMerging/R/plotMDS.R
inSilicoMerging/R/plotRLE.R
inSilicoMerging/R/test_inSilicoMerging_package.R
inSilicoMerging/R/util.R
inSilicoMerging/R/xpn.R
inSilicoMerging/build
inSilicoMerging/build/vignette.rds
inSilicoMerging/inst
inSilicoMerging/inst/CITATION
inSilicoMerging/inst/doc
inSilicoMerging/inst/doc/inSilicoMerging.R
inSilicoMerging/inst/doc/inSilicoMerging.Rnw
inSilicoMerging/inst/doc/inSilicoMerging.pdf
inSilicoMerging/inst/unitTests
inSilicoMerging/inst/unitTests/test_inSilicoMerging.R
inSilicoMerging/man
inSilicoMerging/man/inSilicoMerging-package.Rd
inSilicoMerging/man/merge.Rd
inSilicoMerging/man/plotGeneWiseBoxPlot.Rd
inSilicoMerging/man/plotMDS.Rd
inSilicoMerging/man/plotRLE.Rd
inSilicoMerging/tests
inSilicoMerging/tests/inSilicoMerging_unit_tests.R
inSilicoMerging/vignettes
inSilicoMerging/vignettes/inSilicoMerging.Rnw
inSilicoMerging/vignettes/inSilicoMerging.bib