add_to_seurat: add_to_seurat()

In infercnv: Infer Copy Number Variation from Single-Cell RNA-Seq Data

Description

Add meta.data about CNAs to a Seurat object from an infercnv_obj

Usage

add_to_seurat(
  seurat_obj = NULL,
  infercnv_output_path,
  top_n = 10,
  bp_tolerance = 2e+06
)

Arguments

seurat_obj	Seurat object to add meta.data to (default: NULL)
infercnv_output_path	Path to the output folder of the infercnv run to use
top_n	How many of the largest CNA (in number of genes) to get.
bp_tolerance	How many bp of tolerance to have around feature start/end positions for top_n largest CNVs.

Value

seurat_obj

infercnv documentation built on Nov. 8, 2020, 11:10 p.m.