Man pages for iontree
Data management and analysis of ion trees from ion-trap mass spectrometry
| buildIonTree | Build ion tree |
| createDB | Create a SQLite database |
| distMS2 | Distance metric for MS2 spectral similarity measurement |
| formatSpec | Format mass spec matrix data into a string format, or vice... |
| getMetaInfo | Get metadata information from data file in mzXML |
| getMSnRaw | Get MSn raw data |
| hasMS2 | Check which samples have MS2 spectra generated |
| iontree-class | Class "iontree" |
| iontree-package | MSn-iontree: Ion tree management and analysis |
| metaDataImport | Data entry of meta information |
| mzImport | Data entry of iontree into mz table |
| plot-methods | Plot iontree |
| plotSpectrum | Plot a spectrum |
| rs2iontree | Convert a data frame into iontree |
| saveMSnRaw | Retrieve MS2 and MS3 data and save as R binary in the current... |
| searchMS2 | Search MS2 spectrum from sqlite database |
| show-methods | Show methods for class iontree |
| topIons | Retain spectrum with the most intense ions |
