iterativeBMA: The Iterative Bayesian Model Averaging (BMA) algorithm

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The iterative Bayesian Model Averaging (BMA) algorithm is a variable selection and classification algorithm with an application of classifying 2-class microarray samples, as described in Yeung, Bumgarner and Raftery (Bioinformatics 2005, 21: 2394-2402).

Author
Ka Yee Yeung, University of Washington, Seattle, WA, with contributions from Adrian Raftery and Ian Painter
Date of publication
None
Maintainer
Ka Yee Yeung <kayee@u.washington.edu>
License
GPL (>= 2)
Version
1.32.0
URLs

View on Bioconductor

Man pages

bma_predict
Predicted Probabilities from Bayesian Model Averaging
brier_score
Brier Score: assessment of prediction accuracy
BssWssFast
Between-groups sum-of-squares to within-groups sum-of-squares...
imageplot_iterate_bma
An image plot visualization tool
iterateBMAglm_train
Iterative Bayesian Model Averaging: training step
iterateBMAglm_train_predict
Iterative Bayesian Model Averaging: training and prediction
iterateBMAglm_train_predict_test
Iterative Bayesian Model Averaging: training, prediction and...
iterateBMAglm_wrapper
Iterative Bayesian Model Averaging
iterativeBMA-internal
Internal functions for iterativeBMA
iterativeBMA-package
The Iterative Bayesian Model Averaging (BMA) algorithm
testClass
Sample Test Data for the Iterative BMA Algorithm
testData
Sample Test Data for the Iterative BMA Algorithm
trainClass
Sample Training Data for the Iterative BMA Algorithm
trainData
Sample Training Data for the Iterative BMA Algorithm

Files in this package

iterativeBMA/DESCRIPTION
iterativeBMA/NAMESPACE
iterativeBMA/R
iterativeBMA/R/BssWssFast.R
iterativeBMA/R/brier_score.R
iterativeBMA/R/convert_genename.R
iterativeBMA/R/imageplot_iterate_bma.R
iterativeBMA/R/iterateBMAglm_2class.R
iterativeBMA/R/predict_bicglm.R
iterativeBMA/build
iterativeBMA/build/vignette.rds
iterativeBMA/data
iterativeBMA/data/testClass.RData
iterativeBMA/data/testData.RData
iterativeBMA/data/trainClass.RData
iterativeBMA/data/trainData.RData
iterativeBMA/inst
iterativeBMA/inst/doc
iterativeBMA/inst/doc/iterativeBMA.R
iterativeBMA/inst/doc/iterativeBMA.Rnw
iterativeBMA/inst/doc/iterativeBMA.pdf
iterativeBMA/man
iterativeBMA/man/BssWssFast.Rd
iterativeBMA/man/bma_predict.Rd
iterativeBMA/man/brier_score.Rd
iterativeBMA/man/imageplot_iterate_bma.Rd
iterativeBMA/man/iterateBMAglm_train.Rd
iterativeBMA/man/iterateBMAglm_train_predict.Rd
iterativeBMA/man/iterateBMAglm_train_predict_test.Rd
iterativeBMA/man/iterateBMAglm_wrapper.Rd
iterativeBMA/man/iterativeBMA-internal.Rd
iterativeBMA/man/iterativeBMA-package.Rd
iterativeBMA/man/testClass.Rd
iterativeBMA/man/testData.Rd
iterativeBMA/man/trainClass.Rd
iterativeBMA/man/trainData.Rd
iterativeBMA/vignettes
iterativeBMA/vignettes/iterativeBMA.Rnw
iterativeBMA/vignettes/iterativeBMA.bib