lefserPlot: Plots results from 'lefser' function

In lefser: R implementation of the LEfSE method for microbiome biomarker discovery

Description

'lefserPlot' function displays effect sizes for differentially expressed microorganisms and whether they are more abundant in '0' or '1' sample group.

Usage

lefserPlot(df, colors = c("red", "forestgreen"), trim.names = TRUE)

Arguments

df	Data frame produced by 'lefser'.
colors	character(2) The two colors corresponding to class 0 and 1, respectively. Defaults to 'c("red", "forestgreen")'.
trim.names	If 'TRUE' extracts the most specific taxonomic rank of organism.

Value

Function returns plot of effect size scores produed by 'lefser'. Positive scores represent microorganisms with that are more abundant in class '1'. Negative scores represent microorganisms with that are more abundant in class '0'.

Examples

example("lefser")
lefserPlot(res_group)

lefser documentation built on Nov. 8, 2020, 8:01 p.m.