lpNet-package: Network Inference Of Perturbation Data Using a Linear...
In lpNet: Linear Programming Model for Network Inference
Description
Details
Author(s)
References
Description
lpNet aims at infering biological networks, in particular signaling and gene networks.
For that it takes perturbation data, either steady-state or time-series,
as input and generates an LP model which allows the inference of signaling networks.
For parameter identification either leave-one-out cross-validation or
stratified n-fold cross-validation can be used.
Details
Package: lpNet
Type: Package
Version: 1.99.2
Date: 2013-01-11
License: Artistic License 2.0
Author(s)
B. Knapp, M. R. A. Matos, J. Mazur, L. Kaderali
Maintainer: bettina.knapp@helmholtz-muenchen.de
References
Bettina Knapp and Lars Kaderali, Reconstruction of cellular signal transduction networks using perturbation assays and linear programming, PLoS ONE, 2013.
Marta R. A. Matos, Network inference : extension of linear programming model for time-series data, Master's thesis, Department of Informatics, University of Minho.
lpNet documentation built on Nov. 8, 2020, 7:08 p.m.
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Description Details Author(s) References
Description
lpNet aims at infering biological networks, in particular signaling and gene networks. For that it takes perturbation data, either steady-state or time-series, as input and generates an LP model which allows the inference of signaling networks. For parameter identification either leave-one-out cross-validation or stratified n-fold cross-validation can be used.
Details
| Package: | lpNet |
| Type: | Package |
| Version: | 1.99.2 |
| Date: | 2013-01-11 |
| License: | Artistic License 2.0 |
Author(s)
B. Knapp, M. R. A. Matos, J. Mazur, L. Kaderali
Maintainer: bettina.knapp@helmholtz-muenchen.de
References
Bettina Knapp and Lars Kaderali, Reconstruction of cellular signal transduction networks using perturbation assays and linear programming, PLoS ONE, 2013.
Marta R. A. Matos, Network inference : extension of linear programming model for time-series data, Master's thesis, Department of Informatics, University of Minho.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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