oligodata: Example data for package maCorrSample

In maCorrPlot: Visualize artificial correlation in microarray data

Description

Example expression data to demonstrate the functionality of the package: two data sources A and B with 30 patients and 1000 genes each, for each of which we have RMA expression values, (logarithmized) MAS5 expression values, and MAS5 absent/present calls.

Correspondingly, we have six data matrices whose name are constructed as dat[A|B].[rma|mas5|amp].

Usage

data(oligodata)

Format

All matrices have genes as rows and samples as columns.

Source

These are small anonymized excerpts from a real breast cancer data set.

See Also

CorrSample, plot.corr.sample

Examples

data(oligodata)
str(datA.rma)
str(datB.rma)
str(datA.mas5)
str(datB.mas5)
str(datA.amp)
str(datB.amp)

maCorrPlot documentation built on Nov. 8, 2020, 5:06 p.m.