Man pages for macat
MicroArray Chromosome Analysis Tool
| buildMACAT | Create MACAT list from objects in workspace |
| compute_sliding | Compute and plot smoothing of expression values or scores... |
| discreteKernelize | Discretize and smooth expression values |
| discretize | Discretize expression values |
| discretizeAll | Discretize complete expression matrix |
| discretize_tscores | Discretize regularized t-scores |
| evalScoring | Score differential expression, assess significance, and... |
| evaluateParameters | Evaluate Performance of Kernel Parameters by Cross-validation |
| get_results | Access results of 'evalScoring' |
| html | HTML functions for MACAT. |
| kernelize | Smooth expression values or scores |
| kernelizeAll | Smooth expression data for all chromosomes |
| kernelizeToPython | Smooth expression values and write to file |
| kernels | various kernel functions for computations in MACAT |
| loaddatapkg | Load data package |
| macat-internal | Auxiliary Functions for Computations in MACAT |
| plot_MACATevalScoring | Plot function for MACATevalScoring objects. |
| preprocessedLoader | Read in data and produce MACAT list |
| pythondata | Flat file format |
| scoring | Compute (regularized) t-scores for gene expression data |
| stjd | Subset Microarray Data from St.Jude Children Research... |
