discretizeAll: Discretize complete expression matrix
In macat: MicroArray Chromosome Analysis Tool
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/discretescoring.R
Description
perform discretization on all chromosomes and write python flat files
Usage
1
discretizeAll(data, margin = 10)
Arguments
data
MACATData Object
margin
symmetric quantile in percent
Details
The filename for the python flat files are
discrete_seqs_margin_<margin>_chrom_<chrom>.py
where <chrom> and <margin>
are the names of the chromosome and the margin used for discretization.
For details on the discretization see discretize.
Value
produces python flat file
Author(s)
The MACAT Development team
See Also
Examples
1
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4
5
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8
9
# !!! takes some time !!!
## Not run:
#loaddatapkg("stjudem")
#data(stjude)
data(stjd)
discretizeAll(stjd, margin=10)
## End(Not run)
macat documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/discretescoring.R
Description
perform discretization on all chromosomes and write python flat files
Usage
1 | discretizeAll(data, margin = 10)
|
Arguments
data |
MACATData Object |
margin |
symmetric quantile in percent |
Details
The filename for the python flat files are
discrete_seqs_margin_<margin>_chrom_<chrom>.py
where <chrom> and <margin>
are the names of the chromosome and the margin used for discretization.
For details on the discretization see discretize.
Value
produces python flat file
Author(s)
The MACAT Development team
See Also
Examples
1 2 3 4 5 6 7 8 9 |
# !!! takes some time !!!
## Not run:
#loaddatapkg("stjudem")
#data(stjude)
data(stjd)
discretizeAll(stjd, margin=10)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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