Man pages for metaMS
MS-based metabolomics annotation pipeline
| addRI | Add retention index information to an msp object |
| alignmentLC | LC alignment |
| AnnotateTable | Annotate a Peaktable |
| annotations2tab | Conversion of a list of annotation results into a table |
| constructExpPseudoSpectra | Create a list of all pseudospectra found in a GC-MS... |
| createSTDdbGC | Create an in-house database for GC-MS annotation |
| createSTDdbLC | Create an in-house database for LC-MS annotation |
| errf | Mass error surface for Waters Synapt Q-TOF spectrometers |
| exptable | Sample table for the generation of a database of standards... |
| FEMsettings | Example settings for 'metaMS' |
| GCresults | Results of metaMS for a small GC-MS data set |
| getAnnotationLC | Get LC annotation |
| getAnnotationMat | Obtain relative quantitative annotation results for GC-MS |
| getFeatureInfo | Construct an object containing all meta-information of the... |
| getPeakTable | Extract a peak table from an xcms or CAMERA object |
| LCDBtest | Sample DB for LC-MS annotation |
| LCresults | Result metaMS for a small LC-MS data set |
| match2ExtDB | Match GC-MS spectra to an external reference DB |
| matchExpSpec | Match a GC-MS pseudospectrum to a database with a weighted... |
| matchSamples2DB | Match pseudospectra from several samples to an in-house DB... |
| matchSamples2Samples | Compare pseudospectra across samples (GC-MS) |
| metaMS-package | Analysis pipeline for MS-based metabolomics data |
| metaMSsettings-class | Class '"metaMSsettings"' |
| metaSetting-methods | Get or set values in metaMSsettings objects |
| msp | Functions to handle msp-type objects (GC-MS) |
| peakDetection | Wrapper for XCMS peak detection, to be used for both GC-MS... |
| plotPseudoSpectrum | Plot a pseudospectrum. |
| printString | Functions for metaMS-formatted text output |
| processStandards | Process input files containing raw data for pure standards. |
| readStdInfo | Read information of GC injections of standards from a csv... |
| removeDoubleMasses | Remove double m/z entries in a pseudospectrum |
| runCAMERA | The CAMERA element in the metaMS pipeline |
| runGC | Wrapper for processing of GC-MS data files |
| runLC | Wrapper for processing of LC-MS data files |
| threeStdsDB | Information on three chemical standards measured in GC-MS... |
| treat.DB | Scaling of pseudospectra in an msp object |
