metabCombiner: Method for Combining LC-MS Metabolomics Feature Measurements

This package aligns LC-HRMS metabolomics datasets acquired from biologically similar specimens analyzed under similar, but not necessarily identical, conditions. Two peak-picked and aligned metabolomics feature tables (consisting of m/z, rt, and per-sample abundance measurements, plus optional identifiers & adduct annotations) are accepted as input. The package outputs a combined table of feature pair alignments, organized into groups of similar m/z, and ranked by a similarity score. Input tables are assumed to be acquired using similar (but not necessarily identical) analytical methods.

Package details

AuthorHani Habra [aut, cre], Alla Karnovsky [ths]
Bioconductor views MassSpectrometry Metabolomics Software
MaintainerHani Habra <hhabra1@gmail.com>
LicenseGPL-3
Version1.0.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabCombiner")

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metabCombiner documentation built on Dec. 10, 2020, 2 a.m.