Man pages for metabCombiner
Method for Combining LC-MS Metabolomics Feature Measurements
| adjustData | Process and Filter Metabolomics Feature Lists |
| calcScores | Compute Feature Similarity Scores |
| combinedTable | Obtain metabCombiner Feature Alignment Report |
| combinerCheck | Obtain Errors for metabCombiner Object Checks |
| crossValFit | Cross Validation for Model Fits |
| detectFields | Detect metabData Input Columns |
| evaluateParams | Evaluate Similarity Score Parameters |
| filterAnchors | Filter Outlier Ordered Pairs |
| filterRT | Filter Features by Retention Time |
| findDuplicates | Find and Remove Duplicate Features |
| fit_gam | Fit RT Projection Model With GAMs |
| fit_loess | Fit RT Projection Model With LOESS |
| formCombinedTable | Form Combiner Report Table |
| getAnchors | Get Ordered Retention Time Pairs |
| getCoefficients | Obtain Last-Used Score Coefficients |
| getData | Get Processed Dataset |
| getExtra | Get Extra Data Column Names |
| getModel | Get Fitted RT Model |
| getSamples | Get Sample Names From metabCombiner or metabData Object |
| getStats | Get Object Statistics |
| identityAnchorSelection | Select Matching Ids as Anchors |
| isCombinedTable | Determine combinedTable Validity |
| isMetabCombiner | Determine if object is a valid metabCombiner object |
| isMetabData | Determine validity of input metabData object |
| iterativeAnchorSelection | Iterative Selection of Ordered Pairs |
| labelRows | Annotate and Remove Report Rows |
| metabCombiner | Form a metabCombiner object. |
| metabCombiner-class | 'metabCombiner' Combined Metabolomics Dataset Class |
| metabData | Constructor for the metabData object. |
| metabData-class | 'metabData' Single Metabolomics Dataset Class |
| mzGroup | Binning of mass spectral features in m/z dimension |
| nonmatched | Get Nonmatched Features |
| objective | Weight Parameter Objective Function |
| plasma20 | 20 minute Metabolomics Analysis of Human Plasma |
| plasma30 | 30 minute Metabolomics Analysis of Human Plasma |
| plot_fit | Plot metabCombiner Fits |
| scorePairs | Calculate Pairwise Alignment Scores |
| selectAnchors | Select Anchors for Nonlinear RT Model |
| write2file | Print metabCombiner Report to File. |
