metabomxtr: A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

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The functions in this package return optimized parameter estimates and log likelihoods for mixture models of truncated data with normal or lognormal distributions.

Author
Michael Nodzenski, Anna Reisetter, Denise Scholtens
Date of publication
None
Maintainer
Michael Nodzenski <michael.nodzenski@northwestern.edu>
License
GPL-2
Version
1.8.0

View on Bioconductor

Man pages

anyMissingLevels
A function to determine whether any level of a categorical...
euMetabCData
A sample data set of truncated metabolomics data.
euMetabData
A sample data set of truncated metabolomics data.
idMissingLevels
A function to determine the levels of a categorical variable...
metabdata
A sample data set of truncated metabolomics data
metabomxtr-package
A package to run mixture models on truncated normal or...
mixnorm
A function to perform per-metabolite batch normalization...
mxtrmod
A function to return optimized parameter estimates and the...
mxtrmodLL
A function to return the negative log-likelihood of mixture...
mxtrmodLRT
A function to run likelihood ratio tests on full vs. reduced...
mxtrmodstart
A function to generate starting parameter estimates for the...
removeMissingLevels
A function to remove levels of categorical variables with...
runMxtrmod
A function to return optimized parameter estimates and the...
xdesign-methods
~~ Methods for Function 'xdesign' ~~
yvals-methods
~~ Methods for Function 'yvals' ~~
zdesign-methods
~~ Methods for Function 'zdesign' ~~

Files in this package

metabomxtr/DESCRIPTION
metabomxtr/NAMESPACE
metabomxtr/NEWS
metabomxtr/R
metabomxtr/R/AllGenerics.R
metabomxtr/R/anyMissingLevels.R
metabomxtr/R/idMissingLevels.R
metabomxtr/R/mixnorm.R
metabomxtr/R/mxtrmod.R
metabomxtr/R/mxtrmodLL.R
metabomxtr/R/mxtrmodLRT.R
metabomxtr/R/mxtrmodstart.R
metabomxtr/R/removeMissingLevels.R
metabomxtr/R/runMxtrmod.R
metabomxtr/R/xdesign-methods.R
metabomxtr/R/yvals-methods.R
metabomxtr/R/zdesign-methods.R
metabomxtr/build
metabomxtr/build/vignette.rds
metabomxtr/data
metabomxtr/data/euMetabCData.rda
metabomxtr/data/euMetabData.rda
metabomxtr/data/metabdata.RData
metabomxtr/inst
metabomxtr/inst/doc
metabomxtr/inst/doc/Metabomxtr_Vignette.R
metabomxtr/inst/doc/Metabomxtr_Vignette.Rnw
metabomxtr/inst/doc/Metabomxtr_Vignette.pdf
metabomxtr/inst/doc/mixnorm_Vignette.R
metabomxtr/inst/doc/mixnorm_Vignette.Rnw
metabomxtr/inst/doc/mixnorm_Vignette.pdf
metabomxtr/man
metabomxtr/man/anyMissingLevels.Rd
metabomxtr/man/euMetabCData.Rd
metabomxtr/man/euMetabData.Rd
metabomxtr/man/idMissingLevels.Rd
metabomxtr/man/metabdata.Rd
metabomxtr/man/metabomxtr-package.Rd
metabomxtr/man/mixnorm.Rd
metabomxtr/man/mxtrmod.Rd
metabomxtr/man/mxtrmodLL.Rd
metabomxtr/man/mxtrmodLRT.Rd
metabomxtr/man/mxtrmodstart.Rd
metabomxtr/man/removeMissingLevels.Rd
metabomxtr/man/runMxtrmod.Rd
metabomxtr/man/xdesign-methods.Rd
metabomxtr/man/yvals-methods.Rd
metabomxtr/man/zdesign-methods.Rd
metabomxtr/vignettes
metabomxtr/vignettes/Metabomxtr_Vignette.Rnw
metabomxtr/vignettes/mixnorm_Vignette.Rnw