API for metagene2
A package to produce metagene plots
| Global functions | |
|---|---|
| Bam_Handler | Man page |
| add_metadata_to_ci | Source code |
| as_is_region_order | Man page Source code |
| bin_contiguous_regions | Source code |
| bin_coverages_s | Source code |
| bin_discontiguous_regions | Source code |
| bin_region_coverages | Source code |
| bin_rle_list | Source code |
| calculate_bin_ci | Source code |
| calculate_matrices_ci | Source code |
| calculate_matrix_ci | Source code |
| combine_coverages | Source code |
| combine_list_coverages | Source code |
| coverage_order | Man page Source code |
| discontiguous_coverage | Source code |
| get_broadpeak_file | Source code |
| get_coverage_bam_file | Source code |
| get_coverage_region | Source code |
| get_demo_bam_files | Man page Source code |
| get_demo_design | Man page Source code |
| get_demo_metagene | Man page Source code |
| get_demo_region_filenames | Man page Source code |
| get_demo_regions | Man page Source code |
| get_demo_rna_bam_files | Man page Source code |
| get_demo_rna_regions | Man page Source code |
| get_different_seqnames_bam_file | Source code |
| get_gff_file | Source code |
| get_gtf_file | Source code |
| get_narrowpeak_file | Source code |
| get_not_indexed_bam_file | Source code |
| get_view_means | Source code |
| group_coverages_s | Source code |
| merge_chip | Source code |
| merge_chip_ratio | Source code |
| merge_reduce | Source code |
| metagene2 | Man page |
| metagene2_heatmap | Man page Source code |
| plot_metagene | Man page Source code |
| psum | Source code |
| read.BAM | Source code |
| split_by_metadata | Source code |
| split_matrices | Source code |
| split_matrix | Source code |
| split_regions | Source code |
| validate_alpha | Source code |
| validate_assay | Source code |
| validate_avoid_gaps | Source code |
| validate_bam_files | Source code |
| validate_bam_files_format | Source code |
| validate_bam_files_values | Source code |
| validate_bin_count | Source code |
| validate_combination | Source code |
| validate_cores | Source code |
| validate_design_format | Source code |
| validate_extend_reads | Source code |
| validate_flip_regions | Source code |
| validate_force_seqlevels | Source code |
| validate_gaps_threshold | Source code |
| validate_normalization | Source code |
| validate_padding_size | Source code |
| validate_region_mode | Source code |
| validate_sample_count | Source code |
| validate_split_by | Source code |
| validate_verbose | Source code |
