Files in metagene2
A package to produce metagene plots
NEWS
README.md
NAMESPACE
DESCRIPTION
R/metagene.R
R/permutation.R
R/bam_handler.R
R/parallel_job.R
R/validations.R
R/heatmap_from_metagene.R
R/normalization.R
R/plot_metagene.R
R/demo.R
R/coverage_operations.R
R/parameter_manager.R
inst/doc/metagene2.Rmd
inst/doc/metagene2.R
inst/doc/metagene2.html
inst/extdata/ctrl.bam.bai
inst/extdata/fake_align1.bam.bai
inst/extdata/DPM1.bed
inst/extdata/fake_align3.sam.coverage_rpm.RData
inst/extdata/ctrl.bam
inst/extdata/fake_align1_minus.bam.bai
inst/extdata/align2_rep2.bam.bai
inst/extdata/ctrl.bed
inst/extdata/coverage.bam
inst/extdata/align1_rep2.bam.bai
inst/extdata/fake_align1.sam.coverage_rpm.RData
inst/extdata/NDUFAB1.bed
inst/extdata/DPM1less.bed
inst/extdata/different_header.bam
inst/extdata/fake_align3.bam
inst/extdata/fake_align2.sam.coverage_rpm.RData
inst/extdata/fake_align3.sam.regions.RData
inst/extdata/fake_align3.bam.bai
inst/extdata/list1.narrowPeak
inst/extdata/coverage.bam.bai
inst/extdata/align2_rep1.bam.bai
inst/extdata/fake_align1.sam.regions.RData
inst/extdata/nuc3.bam
inst/extdata/list1.broadPeak
inst/extdata/fake_align1.sam.coverage.RData
inst/extdata/design.txt
inst/extdata/list2.bed
inst/extdata/fake_align2.bam
inst/extdata/align2_rep2.bam
inst/extdata/align1_rep2.bam
inst/extdata/NDUFAB1less.bed
inst/extdata/list_coverage.bed
inst/extdata/list1.txt
inst/extdata/fake_align2.sam.coverage.RData
inst/extdata/fake_align2.sam.coverage.df
inst/extdata/fake_align1.bam
inst/extdata/test.gtf
inst/extdata/fake_align1.sam.coverage.df
inst/extdata/nuc3.bam.bai
inst/extdata/fake_align3.sam.coverage.df
inst/extdata/not_indexed.bam
inst/extdata/list1.bed
inst/extdata/align2_rep1.bam
inst/extdata/cyto3.bam.bai
inst/extdata/different_header.bam.bai
inst/extdata/test.gff
inst/extdata/fake_align1_minus.bam
inst/extdata/cyto3.bam
inst/extdata/list2.txt
inst/extdata/align1_rep1.bed
inst/extdata/lists.bed
inst/extdata/align1_rep1.bam.bai
inst/extdata/fake_align2.bam.bai
inst/extdata/fake_align2.sam.regions.RData
inst/extdata/align1_rep1.bam
inst/extdata/fake_align3.sam.coverage.RData
inst/unitTests/test_demo.R
inst/unitTests/test_bam_handler.R
inst/unitTests/test_metagene.R
inst/unitTests/test_heatmap.R
inst/unitTests/test_parallel_job.R
inst/unitTests/test_parameter_manager.R
inst/unitTests/Makefile
build/vignette.rds
tests/runTests.R
vignettes/metagene2.Rmd
vignettes/img/processing_step_schema.png
man/as_is_region_order.Rd
man/metagene2_heatmap.Rd
man/get_demo_region_filenames.Rd
man/get_demo_rna_regions.Rd
man/coverage_order.Rd
man/plot_metagene.Rd
man/get_demo_regions.Rd
man/metagene2.Rd
man/get_demo_design.Rd
man/get_demo_metagene.Rd
man/Bam_Handler.Rd
man/get_demo_bam_files.Rd
man/get_demo_rna_bam_files.Rd
