diagplot.noiseq.saturation: Simpler implementation of saturation plots inspired from...

In metaseqR: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

Description

Helper function for diagplot.noiseq to plot feature detection saturation as presented in the NOISeq package vignette. It has two main outputs: a set of figures, one for each input sample depicting the saturation for each biotype and one single multiplot which depicts the saturation of all samples for each biotype. It expands the saturation plots of NOISeq by allowing more samples to be examined in a simpler way. Don't use this function directly. Use either diagplot.metaseqr or diagplot.noiseq.

Usage

    diagplot.noiseq.saturation(x, o, tb, path = NULL)

Arguments

x	the count data matrix.
o	one or more R plotting device to direct the plot result to. Supported mechanisms: "x11" (default), "png", "jpg", "bmp", "pdf" or "ps".
tb	the vector of biotypes, one for each row of x.
path	the path to create output files.

Value

The filenames of the plots produced in a named list with names the which.plot argument. If output="x11", no output filenames are produced.

Author(s)

Panagiotis Moulos

metaseqR documentation built on Nov. 8, 2020, 5:57 p.m.