The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).
|Author||Maciej Pajak, T. Ian Simpson|
|Date of publication||None|
|Maintainer||Maciej Pajak <email@example.com>|
aggregateRanks: Aggreagate ranks from multiple sources with various methods
getPredictedTargets: Get aggregated ordered list of predicted targets for miRNA
getTargetsFromSource: Get target list from a single source
MirnaDb-class: Database class
miRNAtap: miRNAtap: microRNA Targets - Aggregated Predictions.
translate: Homology transfer for miRNAtap