miRNAtap: miRNAtap: microRNA Targets - Aggregated Predictions

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The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author
Maciej Pajak, T. Ian Simpson
Date of publication
None
Maintainer
Maciej Pajak <m.pajak@sms.ed.ac.uk>
License
GPL-2
Version
1.8.0

View on Bioconductor

Man pages

aggregateRanks
Aggreagate ranks from multiple sources with various methods
getPredictedTargets
Get aggregated ordered list of predicted targets for miRNA
getTargetsFromSource
Get target list from a single source
MirnaDb-class
Database class
miRNAtap
miRNAtap: microRNA Targets - Aggregated Predictions.
translate
Homology transfer for miRNAtap

Files in this package

miRNAtap/DESCRIPTION
miRNAtap/NAMESPACE
miRNAtap/NEWS
miRNAtap/R
miRNAtap/R/dbClassesAndMethods.R
miRNAtap/R/dbDataAccess.R
miRNAtap/R/miRNAtap.R
miRNAtap/build
miRNAtap/build/vignette.rds
miRNAtap/inst
miRNAtap/inst/doc
miRNAtap/inst/doc/miRNAtap.R
miRNAtap/inst/doc/miRNAtap.Rnw
miRNAtap/inst/doc/miRNAtap.pdf
miRNAtap/man
miRNAtap/man/MirnaDb-class.Rd
miRNAtap/man/aggregateRanks.Rd
miRNAtap/man/getPredictedTargets.Rd
miRNAtap/man/getTargetsFromSource.Rd
miRNAtap/man/miRNAtap.Rd
miRNAtap/man/translate.Rd
miRNAtap/tests
miRNAtap/tests/testthat
miRNAtap/tests/testthat.R
miRNAtap/tests/testthat/test_sanity.R
miRNAtap/vignettes
miRNAtap/vignettes/miRNAtap.Rnw
miRNAtap/vignettes/refs.bib