miRNAtap: miRNAtap: microRNA Targets - Aggregated Predictions

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

AuthorMaciej Pajak, T. Ian Simpson
Date of publicationNone
MaintainerMaciej Pajak <m.pajak@sms.ed.ac.uk>
LicenseGPL-2
Version1.8.0

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Files in this package

miRNAtap/DESCRIPTION
miRNAtap/NAMESPACE
miRNAtap/NEWS
miRNAtap/R
miRNAtap/R/dbClassesAndMethods.R miRNAtap/R/dbDataAccess.R miRNAtap/R/miRNAtap.R
miRNAtap/build
miRNAtap/build/vignette.rds
miRNAtap/inst
miRNAtap/inst/doc
miRNAtap/inst/doc/miRNAtap.R
miRNAtap/inst/doc/miRNAtap.Rnw
miRNAtap/inst/doc/miRNAtap.pdf
miRNAtap/man
miRNAtap/man/MirnaDb-class.Rd miRNAtap/man/aggregateRanks.Rd miRNAtap/man/getPredictedTargets.Rd miRNAtap/man/getTargetsFromSource.Rd miRNAtap/man/miRNAtap.Rd miRNAtap/man/translate.Rd
miRNAtap/tests
miRNAtap/tests/testthat
miRNAtap/tests/testthat.R
miRNAtap/tests/testthat/test_sanity.R
miRNAtap/vignettes
miRNAtap/vignettes/miRNAtap.Rnw
miRNAtap/vignettes/refs.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.