syn.data: Simulated Gene Expression Data

In minet: Mutual Information NETworks

Description

Dataset containing 100 samples and 50 genes generated by the publicly available SynTReN generator using a yeast source network - see syn.net

Usage

data(syn.data)

Format

syn.data is a data frame containing 100 rows and 50 columns. Each row contains a microarray experiment and each column contains a gene.

Source

SynTReN 1.1.3 with source network : yeast\_nn.sif

References

Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, and Kathleen Marchal. Syntren : a generator of synthetic gene expression dataset for design and analysis of structure learning algorithms. BMC Bioinformatics, 2006.

Examples

data(syn.data)
data(syn.net)
mim <- build.mim(syn.data,estimator="spearman")
infered.net <- mrnet(mim)
max(fscores(validate( infered.net, syn.net )))

minet documentation built on Nov. 8, 2020, 6 p.m.