syn.net: SynTReN Source Network

In minet: Mutual Information NETworks

Description

This is the true underlying network used to generate the dataset loaded by data(syn.data) - see syn.data.

Usage

data(syn.net)

Format

syn.net is a boolean adjacency matrix representing an undirected graph of 50 nodes.

Source

syn.net is the "yeast\_nn.sif" source network from the SynTReN generator where all the variables/nodes not in syn.data were removed.

References

Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, and Kathleen Marchal. Syntren : a generator of synthetic gene expression dataset for design and analysis of structure learning algorithms. BMC Bioinformatics, 2006.

Examples

data(syn.data)
data(syn.net)
mim <- build.mim(syn.data,estimator="spearman")
infered.net <- mrnet(mim)
max(fscores(validate( infered.net, syn.net )))

minet documentation built on Nov. 8, 2020, 6 p.m.