API for mitch
Multi-Contrast Gene Set Enrichment Analysis
| Global functions | |
|---|---|
| ANOVA | Source code |
| MANOVA | Source code |
| absseq_score | Source code |
| ballgown_score | Source code |
| colname_substitute | Source code |
| cuffdiff_score | Source code |
| deds_score | Source code |
| dep_score | Source code |
| deseq2_score | Source code |
| desingle_score | Source code |
| detailed_sets | Source code |
| diffbind_score | Source code |
| dmrcate_score | Source code |
| edger_score | Source code |
| gene_sector_table | Source code |
| geneset_sector_table | Source code |
| genesetsExample | Man page |
| get_os | Source code |
| ggpairs_contour | Source code |
| ggpairs_points | Source code |
| ggpairs_points_subset | Source code |
| gmt_import | Man page Source code |
| heatmapx | Source code |
| k36a | Man page |
| k9a | Man page |
| mapGeneIds | Source code |
| mast_score | Source code |
| mitch | Man page |
| mitch_calc | Man page Source code |
| mitch_import | Man page Source code |
| mitch_metrics_calc | Source code |
| mitch_metrics_calc1d | Source code |
| mitch_plots | Man page Source code |
| mitch_rank | Source code |
| mitch_report | Man page Source code |
| msmstests_score | Source code |
| muscat_score | Source code |
| myImportedData | Man page |
| myList | Man page |
| noiseq_score | Source code |
| plgem_score | Source code |
| plot1d_detailed | Source code |
| plot1d_profile_dist | Source code |
| plot1d_volcano | Source code |
| plot2d_detailed_density | Source code |
| plot2d_detailed_scatter | Source code |
| plot2d_detailed_violin | Source code |
| plot2d_gene_quadrant_barchart | Source code |
| plot2d_heatmap | Source code |
| plot2d_profile_density | Source code |
| plot2d_profile_dist | Source code |
| plot2d_set_quadrant_barchart | Source code |
| plot2d_set_scatter | Source code |
| plot2d_set_scatter_top | Source code |
| plot3d_detailed_density | Source code |
| plot3d_detailed_points | Source code |
| plot3d_detailed_violin | Source code |
| plot_effect_vs_significance | Source code |
| plot_geneset_hist | Source code |
| preranked_score | Source code |
| resExample | Man page |
| rna | Man page |
| scde_score | Source code |
| sdams_score | Source code |
| seurat_score | Source code |
| sleuth_score | Source code |
| tcc_score | Source code |
| topconfect_score | Source code |
