gmt_import: gmt_import
In mitch: Multi-Contrast Gene Set Enrichment Analysis
Description
Usage
Arguments
Value
Examples
Description
This function imports GMT files into a list of character vectors for mitch
analysis. GMT files are a commonly used
format for lists of genes used in pathway enrichment analysis. GMT files can
be obtained from Reactome, MSigDB, etc.
Usage
1
gmt_import(gmtfile)
Arguments
gmtfile
a gmt file.
Value
a list of gene sets.
Examples
1
2
3
# Import some gene sets
genesetsExample<-gmt_import(system.file('extdata/sample_genesets.gmt',
package = 'mitch'))
mitch documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Value Examples
Description
This function imports GMT files into a list of character vectors for mitch analysis. GMT files are a commonly used format for lists of genes used in pathway enrichment analysis. GMT files can be obtained from Reactome, MSigDB, etc.
Usage
1 | gmt_import(gmtfile)
|
Arguments
gmtfile |
a gmt file. |
Value
a list of gene sets.
Examples
1 2 3 | # Import some gene sets
genesetsExample<-gmt_import(system.file('extdata/sample_genesets.gmt',
package = 'mitch'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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