resExample: resExample: Example mitch result

Description Usage Format Examples


Example of mitch results. Enrichment of the Reactome gene sets in the RNA, H3K9ac and H3K36ac datasets. The structure of this data set is a list where the 1st element is "input_profile" that has been imported (data frame), 2nd element is the "input_genesets" (names list of gene names [character vectors]), 3rd is "ranked_profile" which is the input profiling data after ranking (data frame), 4th is "enrichment_result" which is a data frame which provides enrichment information on each gene set in the profiling data including s scores, p-values and FDR adjusted p-values. 5th is "analysis_metrics" (list). The 6th slot is "detailed_sets" which is a list of 5 matrices which details the enrichment of members of selected gene sets.




list of mixed data types



mitch documentation built on Nov. 8, 2020, 6 p.m.