Mixture Nested Effects Models

app | Processed scRNAseq from pooled CRISPR screens |

bootstrap | Bootstrap. |

clustNEM | Cluster NEM. |

createApp | Creating app data. |

fitacc | Simulation accuracy. |

fuzzyindex | Calculate fuzzy ground truth. |

getAffinity | Calculate responsibilities. |

getIC | Calculate negative penalized log likelihood. |

hamSim | Accuracy for two phis. |

mnem | Mixture NEMs - main function. |

mnemh | Hierarchical mixture. |

mnemk | Learn the number of components K and optimize the mixture. |

nem | Implementation of the original NEM |

plot.bootmnem | Plot bootstrap mnem result. |

plotConvergence | Plot convergence of EM |

plotDnf | Plot disjunctive normal form. |

plot.mnem | Plot mnem result. |

plot.mnemsim | Plot simulated mixture. |

scoreAdj | Network score |

simData | Simulate data. |

transitive.closure | Transitive closure of a directed acyclic graph (dag) |

transitive.reduction | Transitive reduction |

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