app: Processed scRNAseq from pooled CRISPR screens

Description Usage References Examples

Description

Example data: mnem results for the Dixit et al., 2016 and Datlinger et al., pooled CRISPR screens. For details see the vignette or function createApp().

Usage

1

References

Datlinger, P., Rendeiro, A., Schmidl, C., Krausgruber, T., Traxler, P., Klughammer, J., Schuster, L. C., Kuchler, A., Alpar, D., and Bock, C. (2017). Pooled crispr screening with single-cell transcriptome readout. Nature Methods, 14, 297-301.

Dixit, A., Parnas, O., Li, B., Chen, J., Fulco, C. P., Jerby-Arnon, L., Marjanovic, N. D., Dionne, D., Burks, T., Raychowdhury, R., Adamson, B., Norman, T. M., Lander, E. S., Weissman, J. S., Friedman, N., and Regev, A. (2016). Perturb-seq: Dissecting molecular circuits with scalable single-cell rna profiling of pooled genetic screens. Cell, 167(7), 1853-1866.e17.

Examples

1

mnem documentation built on Nov. 18, 2020, 2 a.m.