moa.sup-class: Class '"moa.sup"'

In mogsa: Multiple omics data integrative clustering and gene set analysis

Description

moa.sup class desc.

Objects from the Class

Objects can be created by calls of the form new("moa.sup", ...).

Slots

sup:

Object of class "list", the matrix of supplementary data.

coord.sep:

The projection of geneset infromation on each separate data.

coord.comb:

The projection of geneset infromation on total dataset.

score:

the gene set-sample pathway score

score.data:

the gene set-sample pathway score, data separate

score.pc:

the gene set-sample pathway score, PC separate

score.sep:

the gene set-sample pathway score, separate.

p.val:

the p value matrix have the same dimension with score matrix.

p.val.corrected:

the matrix of corrected p values.

Methods

There is no generic function for objects of "moa.sup", but have specific function, including: - decompose.gs.ind - box.gs.feature - plotGS - decompose.gs.group

Author(s)

Chen Meng

See Also

objects to See Also as decompose.gs.ind, box.gs.feature, plotGS, decompose.gs.group.

Examples

	showClass("moa.sup")
	data(NCI60_4array_supdata)
	data(NCI60_4arrays)

	sapply(NCI60_4array_supdata, dim)
	ana <- moa(NCI60_4arrays, proc.row = "center_ssq1", w.data = "inertia", statis = TRUE)
	plot(ana, value="eig")
	smoa <- sup.moa(ana, sup=NCI60_4array_supdata, nf=5)

mogsa documentation built on Nov. 8, 2020, 5:41 p.m.