prepMsigDB: Conver gmt format file to a list
In mogsa: Multiple omics data integrative clustering and gene set analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Convert a gmt file (Could be downloaded from MSigDB) to a list of gene sets information.
Usage
1
Arguments
file
The directory and file name of the gmt file.
Value
This function returns an object of list containing gene set information, which could be further processed by function "prepSupMoa" to convert to the object that can be used as input of "sup.moa" or "mogsa".
Author(s)
Chen Meng
See Also
See Also as prepGraphite and prepSupMoa.
Examples
1
2
3
4
# not run
dir <- system.file(package = "mogsa")
preGS <- prepMsigDB(file=paste(dir,
"/extdata/example_msigdb_data.gmt.gz", sep = ""))
mogsa documentation built on Nov. 8, 2020, 5:41 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Convert a gmt file (Could be downloaded from MSigDB) to a list of gene sets information.
Usage
1 |
Arguments
file |
The directory and file name of the gmt file. |
Value
This function returns an object of list containing gene set information, which could be further processed by function "prepSupMoa" to convert to the object that can be used as input of "sup.moa" or "mogsa".
Author(s)
Chen Meng
See Also
See Also as prepGraphite and prepSupMoa.
Examples
1 2 3 4 | # not run
dir <- system.file(package = "mogsa")
preGS <- prepMsigDB(file=paste(dir,
"/extdata/example_msigdb_data.gmt.gz", sep = ""))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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