MosaicsFitParam-class: Class "MosaicsFitParam"

Description Objects from the Class Slots Author(s) References See Also Examples

Description

This class represents parameters for mosaicsFit function.

Objects from the Class

Objects can be created by calls of the form new("MosaicsFitParam", ...).

Slots

k:

Object of class "numeric", representing a parameter for mosaicsFit function.

meanThres:

Object of class "numeric", representing a parameter for mosaicsFit function.

s:

Object of class "numeric", representing a parameter for mosaicsFit function.

d:

Object of class "numeric", representing a parameter for mosaicsFit function.

Author(s)

Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

References

Kuan, PF, D Chung, G Pan, JA Thomson, R Stewart, and S Keles (2011), "A Statistical Framework for the Analysis of ChIP-Seq Data", Journal of the American Statistical Association, Vol. 106, pp. 891-903.

Chung, D, Zhang Q, and Keles S (2014), "MOSAiCS-HMM: A model-based approach for detecting regions of histone modifications from ChIP-seq data", Datta S and Nettleton D (eds.), Statistical Analysis of Next Generation Sequencing Data, Springer.

See Also

mosaicsFit.

Examples

1
showClass("MosaicsFitParam")

mosaics documentation built on May 31, 2017, 3:09 p.m.

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