API for motifRG
A package for discriminative motif discovery, designed for high throughput sequencing dataset
| Global functions | |
|---|---|
| Motif-class | Man page |
| YY1.control | Man page |
| YY1.peak | Man page |
| addGap | Source code |
| addReversecomplement | Source code |
| appendNucleotides | Source code |
| bestPWMMatch | Source code |
| bestPWMMatchCoor | Source code |
| class:Motif | Man page |
| combineReversecomplement | Source code |
| consensus | Source code |
| countNmer | Source code |
| countSet | Source code |
| countSetGeneral | Source code |
| ctcf.motifs | Man page |
| degeneratePattern | Source code |
| discretize.glm | Source code |
| entropy | Source code |
| enumerateNmer | Source code |
| expandPattern | Source code |
| findMotif | Man page Source code |
| findMotifFasta | Man page Source code |
| findMotifFgBg | Man page Source code |
| findPatternView | Source code |
| getPWM | Source code |
| getScore | Source code |
| getScore.bootStrap | Source code |
| getSequence | Man page Source code |
| isContained | Source code |
| isPalindrome | Source code |
| logPWM | Source code |
| maskPattern | Source code |
| matchPWMCoor | Source code |
| motifHtmlTable | Man page Source code |
| motifLatexTable | Man page Source code |
| motifScore | Source code |
| pasteSeq | Source code |
| patternInfo | Source code |
| plotMotif | Man page Source code |
| plotPWM | Source code |
| plotPair | Source code |
| polyn | Source code |
| reduceReversecomplement | Source code |
| refinePWMMotif | Man page Source code |
| refinePWMMotifExtend | Man page Source code |
| relativeEntropy | Source code |
| scanPWMMatch | Source code |
| seqToMatrix | Source code |
| split.pwm | Source code |
| summaryMotif | Man page Source code |
| trimPattern | Source code |
