Man pages for motifRG
A package for discriminative motif discovery, designed for high throughput sequencing dataset
| ctcf.motifs | CTCF motifs predicted by motifRG |
| findMotif | De-novo discovery of distriminative motifs |
| findMotifFasta | Wrapper function for findMotif using fasta input |
| findMotifFgBg | Wrapper function for findMotif using two sequence datasets |
| getSequence | Fetch genomic sequences from GRanges Object |
| Motif | Motif objects |
| motifLatexTable | create of table of motifs |
| plotMotif | plot motif sequence matches |
| refinePWMMotif | create a PWM (Position Weight Model) model given a initial... |
| refinePWMMotifExtend | create an extended PWM (Position Weight Model) model given a... |
| summaryMotif | summarize a list of motifs |
| YY1.control | Background for YY1 ChIP-Seq peaks in HepG2 |
| YY1.peak | YY1 ChIP-Seq peaks in HepG2 |
