myvariant: Accesses MyVariant.info variant query and annotation services

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Author
Adam Mark
Date of publication
None
Maintainer
Adam Mark, Chunlei Wu <cwu@scripps.edu>
License
Artistic-2.0
Version
1.4.0

View on Bioconductor

Man pages

formatHgvs
Get all HGVS IDs from Vcf object.
formatSingleHgvs
Get Hgvs HGVS ID from chromosome, position, reference and...
getVariant
Return the variant object for the given HGVS id.
getVariants
Return the list of variant objects for the given list of HGVS...
metadata
metadata
MyVariant
MyVariant
MyVariant-class
Class '"MyVariant"'
myvariant-package
Access MyVariant.info variant annotation services
queryVariant
Return the query result.
queryVariants
Return the batch query result.

Files in this package

myvariant/DESCRIPTION
myvariant/NAMESPACE
myvariant/R
myvariant/R/MyVariant.R
myvariant/R/readHGVS.R
myvariant/R/utils.R
myvariant/README.md
myvariant/build
myvariant/build/vignette.rds
myvariant/inst
myvariant/inst/doc
myvariant/inst/doc/myvariant.R
myvariant/inst/doc/myvariant.Rnw
myvariant/inst/doc/myvariant.pdf
myvariant/inst/extdata
myvariant/inst/extdata/dbsnp_mini.vcf
myvariant/man
myvariant/man/MyVariant-class.Rd
myvariant/man/MyVariant.Rd
myvariant/man/formatHgvs.Rd
myvariant/man/formatSingleHgvs.Rd
myvariant/man/getVariant.Rd
myvariant/man/getVariants.Rd
myvariant/man/metadata.Rd
myvariant/man/myvariant-package.Rd
myvariant/man/queryVariant.Rd
myvariant/man/queryVariants.Rd
myvariant/vignettes
myvariant/vignettes/myvariant.Rnw