API for mzID
An mzIdentML parser for R

Global functions
[,mzIDCollection,character,missing,missing-method	Man page
[,mzIDCollection,logical,missing,missing-method	Man page
[,mzIDCollection,numeric,missing,missing-method	Man page
[[,mzIDCollection,character,missing-method	Man page
[[,mzIDCollection,numeric,missing-method	Man page
as.list.mzIDCollection	Man page Source code
attrExtract	Source code
attrExtractNameValuePair	Source code
c,mzID-method	Man page
c,mzIDCollection-method	Man page
colNamesToLower	Source code
countChildren	Source code
database,mzID-method	Man page
database,mzIDCollection-method	Man page
database,mzIDdatabase-method	Man page
evidence	Man page
evidence,mzID-method	Man page
evidence,mzIDCollection-method	Man page
evidence,mzIDevidence-method	Man page
files	Man page
files,mzID-method	Man page
files,mzIDCollection-method	Man page
files,mzIDparameters-method	Man page
flatten	Man page
flatten,mzID-method	Man page
flatten,mzIDCollection-method	Man page
flatten,mzIDpeptides-method	Man page
flatten,mzIDpsm-method	Man page
getAdditionalPar	Source code
getDatabaseFile	Source code
getDatabaseFilter	Source code
getDatabaseTranslation	Source code
getEnzymes	Source code
getFragmentTolerance	Source code
getMassTable	Source code
getModifications	Source code
getParentTolerance	Source code
getPath	Source code
getRawFile	Source code
getSearchType	Source code
getSoftware	Source code
getThreshold	Source code
getVersion	Source code
id	Man page
id,mzID-method	Man page
id,mzIDCollection-method	Man page
id,mzIDpsm-method	Man page
idScanMap	Man page
idScanMap,mzID-method	Man page
idScanMap,mzIDCollection-method	Man page
idScanMap,mzIDpsm-method	Man page
increment	Man page
increment,mzIDCollection-method	Man page
isRemote	Source code
keyFor	Man page
keyFor,mzIDCollection,character-method	Man page
length,mzID-method	Man page
length,mzIDCollection-method	Man page
length,mzIDdatabase-method	Man page
length,mzIDevidence-method	Man page
length,mzIDparameters-method	Man page
length,mzIDpeptides-method	Man page
length,mzIDpsm-method	Man page
modifications,mzID-method	Man page
modifications,mzIDCollection-method	Man page
modifications,mzIDpeptides-method	Man page
mzID	Man page Source code
mzID-class	Man page
mzID-getters	Man page
mzID-package	Man page
mzIDCollection	Man page Source code
mzIDCollection-class	Man page
mzIDdatabase	Man page Source code
mzIDdatabase-class	Man page
mzIDevidence	Man page Source code
mzIDevidence-class	Man page
mzIDparameters	Man page Source code
mzIDparameters-class	Man page
mzIDpeptides	Man page Source code
mzIDpeptides-class	Man page
mzIDpsm	Man page Source code
mzIDpsm-class	Man page
names,mzIDCollection-method	Man page
names<-,mzIDCollection,character-method	Man page
parameters	Man page
parameters,mzID-method	Man page
parameters,mzIDCollection-method	Man page
parameters,mzIDparameters-method	Man page
peptides,mzID-method	Man page
peptides,mzIDCollection-method	Man page
peptides,mzIDpeptides-method	Man page
prepareXML	Source code
removeDecoy	Man page
removeDecoy,mzID-method	Man page
removeDecoy,mzIDCollection-method	Man page
safeCol	Source code
scans,mzID-method	Man page
scans,mzIDCollection-method	Man page
scans,mzIDpsm-method	Man page
show,mzID-method	Man page
show,mzIDCollection-method	Man page
show,mzIDdatabase-method	Man page
show,mzIDevidence-method	Man page
show,mzIDparameters-method	Man page
show,mzIDpeptides-method	Man page
show,mzIDpsm-method	Man page
software	Man page
software,mzID-method	Man page
software,mzIDCollection-method	Man page
software,mzIDparameters-method	Man page
subsetWithMapping	Source code
type.convert	Source code