Man pages for nanotatoR
nanotatoR: next generation structural variant annotation and classification
| buildrunBNBedFiles | Reads BED files to produce bionano Bed files |
| clinvar_gene | Extracting genes from clinvar database NCBI. |
| cohortFrequency | Calculates the internal frequencies of SV in bionano cohorts |
| compSmapbed | Extracts gene information from bed files |
| Decipher_extraction | Frequency calculation of variants compared to DGV. |
| DGV_extraction | Frequency calculation of variants compared to DGV. |
| gene_extraction | Extracting genes from gene database NCBI. |
| gene_list_generation | Extracting genes for phenotype/diseases from NCBI. |
| gtr_gene | Extracting genes from gtr database NCBI. |
| internalFrequency | Calculates the internal frequencies of SV in internal cohorts |
| makeMergedSmapData | Merges Bionano SV files to one common SV file |
| makeMergedSVData | Merges Solo SV files to one common SV file |
| nanotatoR | nanotatoR: Annotation package for Bionano Data |
| nanotatoR_main | Annotation of Bionano SV. |
| nonOverlapGenes | Calculates Genes that are near to the SV region |
| omim_gene | Extracting genes from OMIM database NCBI. |
| overlapGenes | Calculates Genes that overlap the SV region |
| readBNBedFiles | Reads Bionano Bedfiles |
| readSMap | Reads SMAP files to extract information |
| run_bionano_filter | Getting the data from annotated smaps to extract SV... |
