makeMergedSVData: Merges Solo SV files to one common SV file

In nanotatoR: nanotatoR: next generation structural variant annotation and classification

Description

Merges Solo SV files to one common SV file

Usage

makeMergedSVData(path, pattern, outpath, fname, dbOutput = c("dataframe",
  "text"))

Arguments

path	character. Path to the solo files.
pattern	character. file name pattern for solo files.
outpath	character. path for output file if dbOutput = text.
fname	character. filename if dbOutput = text.
dbOutput	character. Output type. Default text and dataframe.

Value

Text file containing all the solo SMAP files.

Examples

path <- system.file("extdata", "SoloFile/", package = "nanotatoR")
pattern <- "_hg19.smap"
mergedFiles <- makeMergedSVData(path = path, pattern = pattern, 
dbOutput = "dataframe")
mergedFiles[1,]

nanotatoR documentation built on Nov. 8, 2020, 6:54 p.m.