makeMergedSmapData: Merges Bionano SV files to one common SV file

In nanotatoR: nanotatoR: next generation structural variant annotation and classification

Description

Merges Bionano SV files to one common SV file

Usage

makeMergedSmapData(path, pattern, outpath, fname,
  dbOutput = c("dataframe", "text"))

Arguments

path	character. Path to the solo files.
pattern	character. file name pattern for solo files.
outpath	character. path for output file if dbOutput = text.
fname	character. filename if dbOutput = text.
dbOutput	character. Output type. Default text and dataframe.

Value

Text file containing all the solo SMAP files.

Examples

path <- system.file("extdata", "Bionano_config/", package = "nanotatoR")
pattern <- "_hg19.txt"
mergedSmap <- makeMergedSmapData(path, pattern, dbOutput = "dataframe")

nanotatoR documentation built on Nov. 8, 2020, 6:54 p.m.