plot_tSNE: Plot tSNE
In netDx: Network-based patient classifier
Description
Usage
Arguments
Details
Value
Description
Plot tSNE
Usage
1
Arguments
psn
(matrix) Patient similarity network represented as adjacency
matrix (symmetric). Row and column names are patient IDs. Note that NA
values will be replaced by very small number (effectively zero).
pheno
(data.frame) Patient labels. ID column is patient ID and
STATUS is patient label of interest. tSNE will colour-code nodes by
patient label.
Details
Plots tSNE of patient similarity network using Rtsne
Value
(Rtsne) output of Rtsne call. Side effect of tSNE plot
netDx documentation built on Dec. 11, 2020, 2:01 a.m.
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Description Usage Arguments Details Value
Description
Plot tSNE
Usage
1 |
Arguments
psn |
(matrix) Patient similarity network represented as adjacency matrix (symmetric). Row and column names are patient IDs. Note that NA values will be replaced by very small number (effectively zero). |
pheno |
(data.frame) Patient labels. ID column is patient ID and STATUS is patient label of interest. tSNE will colour-code nodes by patient label. |
Details
Plots tSNE of patient similarity network using Rtsne
Value
(Rtsne) output of Rtsne call. Side effect of tSNE plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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