netbiov: A package for visualizing complex biological network
Version 1.10.0

A package that provides an effective visualization of large biological networks

AuthorShailesh tripathi and Frank Emmert-Streib
Bioconductor views GraphAndNetwork Network Software Visualization
Date of publicationNone
MaintainerShailesh tripathi <shailesh.tripathy@gmail.com>
LicenseGPL (>= 2)
Version1.10.0
URL http://www.bio-complexity.com
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("netbiov")

Popular man pages

color_list: A list object of color vectors
modules_PPI_Athalina: A list object of modules's information of PPI interaction of...
mst.plot: Network plot
plot.netbiov: Visualization of large biological networks.
plot.NetworkSperical.startSet: Exploratory visualization of information spread of biological...
PPI_Athalina: An igraph object of PPI interaction of A. thalina
split.mst: Network plot
See all...

All man pages Function index File listing

Man pages

color_list: A list object of color vectors
gnet_bcell: An igraph object of B-cell network inferred from gene...
level.plot: Exploratory visualization of information spread of biological...
modules_bcell: A list object of modules's information of B-cell network
modules_PPI_Athalina: A list object of modules's information of PPI interaction of...
mst.plot: Network plot
mst.plot.mod: Network plot
plot.abstract.module: Visualization of large biological networks.
plot.abstract.nodes: Exploratory visualization of information spread of biological...
plot.modules: Visualization of large biological networks.
plot.netbiov: Visualization of large biological networks.
plot.NetworkSperical: Exploratory visualization of information spread of biological...
plot.NetworkSperical.startSet: Exploratory visualization of information spread of biological...
plot.spiral.graph: Exploratory visualization of information spread of biological...
PPI_Athalina: An igraph object of PPI interaction of A. thalina
split.mst: Network plot

Functions

absg Source code
absg_mst Source code
auxinnersphere Source code
auxinnersphere_star Source code
colfn Source code
colfn_mod Source code
color.list Man page
count.connection.abstract Source code
count.connection.nodes Source code
count.edges.abstract Source code
count.edges.nodes Source code
curve.level Source code
curve.level1 Source code
dist.mst Source code Source code Source code
edge.col.mod Source code Source code
edgeCol Source code
g1 Man page
gencoord Source code
get.coord.abstract Source code
get.coord.mod Source code
get.coord.mod_abs Source code
get.coord.mod_mst Source code
get.lab.module Source code Source code
get.lab.module1 Source code Source code
get.modules.abstract Source code
get.modules.nodes Source code
get.mst.crd Source code
get.mst.info Source code
get.paths.nodes Source code
get.paths.nodes_abs Source code
get.paths.nodes_l Source code
get.paths.nodes_l_abs Source code
get.paths.nodes_lev Source code
get.spiral Source code
get_rank_spiral Source code
getalllevels Source code
getcol.mod Source code Source code
getcol.nodes Source code
getcol.spiral Source code
getcrd.mod Source code
getcrd.mod.nodes Source code
getcrd.mod_abs Source code
getcrd.mod_mst Source code
getcrdlev Source code
getneighbors Source code
gnet Man page
graph.recreate.abstract Source code
level.plot Man page Source code
lm Man page
mod.function Source code
mod.function.absnode Source code
mod.function.modules Source code
mod.list Man page
mst.plot Man page Source code
mst.plot.mod Man page Source code
nextindstep Source code
orderNeighbors Source code
orderNeighbors.star Source code
plot.NetworkSperical Man page Source code
plot.NetworkSperical.startSet Man page Source code
plot.abstract.module Man page Source code
plot.abstract.nodes Man page Source code
plot.modules Man page Source code
plot.netbiov Man page Source code Source code
plot.spiral.graph Man page Source code
ploteachstep Source code
process_graph Source code
process_graph1 Source code
process_graphxx Source code
reset.split.attributes Source code
rgbToHex.mod Source code Source code Source code Source code
rgbToHex.mod1 Source code Source code
set.attributes Source code
set.attributes_abs Source code
set.edge.col Source code
set.edge.col.wt Source code
set.edge.col.wt_mst Source code
set.edge.col_abs Source code
set.edge.color_mst Source code
set.edge.color_mstmod Source code
set.expression Source code
set.expression_abs Source code
set.graph.attributes Source code
set.graph.attributes_abs Source code
set.graph.attributes_mst Source code
set.label Source code
set.label_abs Source code
set.layout.function Source code
set.layout.function_abs Source code
set.layout.function_mst Source code
set.module.col Source code
set.module.col_abs Source code
set.module.info Source code
set.module.info_abs Source code
set.module.info_mst Source code
set.mst.graph.attributes Source code
set.mst.graph.attributes_mod Source code
set.mst.node.col Source code
set.mst.node.col_mod Source code
set.mst.size Source code
set.mst.size_mod Source code
set.rank.abstract Source code
set.rank.mod Source code
set.rank.mod_abs Source code
set.rank.nodes Source code
set.rank.spiral Source code
set.shortest.paths Source code
set.shortest.paths_abs Source code
set.split.ecolor Source code
set.split.edge.col Source code
set.split.graph.attributes Source code
set.split.mst.crd Source code
set.split.mst.modules Source code
set.split.mst.size Source code
set.split.subgraph Source code
set.split.vector Source code
set.split.vertex.color Source code
set.vertex.size Source code
set.vertex.size_abs Source code
size.module.nodes Source code
split.mst Man page
splitg.mst Man page Source code
tkplot.netbiov Man page Source code Source code
toHex.mod Source code Source code Source code Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/level.plot.R
R/mst.plot.R
R/mst.plot.mod.R
R/plot.NetworkSperical.R
R/plot.NetworkSperical.startSet.R
R/plot.abstract.module.R
R/plot.abstract.nodes.R
R/plot.modules.R
R/plot.netbiov.R
R/plot.spiral.graph.R
R/split.mst.R
build
build/vignette.rds
data
data/PPI_Athalina.RData
data/artificial1.graph.RData
data/artificial2.graph.RData
data/color_list.RData
data/gnet_bcell.RData
data/modules_PPI_Athalina.RData
data/modules_bcell.RData
inst
inst/doc
inst/doc/netbiov-intro.R
inst/doc/netbiov-intro.Rnw
inst/doc/netbiov-intro.pdf
inst/unitTests
inst/unitTests/test_nbv.R
man
man/PPI_Athalina.Rd
man/color_list.Rd
man/gnet_bcell.Rd
man/level.plot.Rd
man/modules_PPI_Athalina.Rd
man/modules_bcell.Rd
man/mst.plot.Rd
man/mst.plot.mod.Rd
man/plot.NetworkSperical.Rd
man/plot.NetworkSperical.startSet.Rd
man/plot.abstract.module.Rd
man/plot.abstract.nodes.Rd
man/plot.modules.Rd
man/plot.netbiov.Rd
man/plot.spiral.graph.Rd
man/split.mst.Rd
tests
tests/runTests.R
vignettes
vignettes/Sweave.sty
vignettes/nbv.bib
vignettes/netbiov-intro.Rnw
vignettes/verbatim.sty
netbiov documentation built on May 20, 2017, 9:52 p.m.