shapiro_screen: Filter "non-normal" genes
In nethet: A bioconductor package for high-dimensional exploration of biological network heterogeneity
Description
Usage
Arguments
Details
Value
Author(s)
Description
Filter "non-normal" genes
Usage
1
shapiro_screen(x1, x2, sign.level = 0.001)
Arguments
x1
expression matrix (condition 1)
x2
expression matrix (condition 2)
sign.level
sign.level in Shapiro-Wilk tests (default: sign.level=0.001)
Details
Discarding genes which have Shapiro-Wilk p-value (corrected for multiplicity)
smaller than sign.level in either of the two conditions. We used sign.level=0.001
in the GGMGSA paper.
Value
list consisting of
x1.filt
expression matrix (condition 1) after filtering
x2.filt
expression matrix (condition 2) after filtering
Author(s)
n.stadler
nethet documentation built on Nov. 8, 2020, 6:54 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Filter "non-normal" genes
Usage
1 | shapiro_screen(x1, x2, sign.level = 0.001)
|
Arguments
x1 |
expression matrix (condition 1) |
x2 |
expression matrix (condition 2) |
sign.level |
sign.level in Shapiro-Wilk tests (default: sign.level=0.001) |
Details
Discarding genes which have Shapiro-Wilk p-value (corrected for multiplicity) smaller than sign.level in either of the two conditions. We used sign.level=0.001 in the GGMGSA paper.
Value
list consisting of
x1.filt |
expression matrix (condition 1) after filtering |
x2.filt |
expression matrix (condition 2) after filtering |
Author(s)
n.stadler
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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