HBA: R function for calculating the histone binding affinity score...

In nuCpos: An R package for prediction of nucleosome positions

Description

This function invokes a Fortran subroutine to calculate histone binding score. Nucleosomal and linker models built upon the chemical maps are used for the calculation.

Usage

HBA(inseq, species = "mm", silent = FALSE)

Arguments

inseq	a character or DNAString object. The length of the character string must be 147 bp.
species	a character = mm, sc or sp; "mm" for mouse, "sc" for S. cerevisiae and "sp" for S. pombe.
silent	a logical value indicating whether messages are printed in the console.

Value

HBA outputs one numeric value: histone binding affinity for a whole nucleosome.

Examples

load(system.file("extdata","inseq.RData",package="nuCpos"))
HBA(inseq, species = "sc")

nuCpos documentation built on Nov. 8, 2020, 5:33 p.m.