justSNPRMA: Summarization of SNP data

In oligo: Preprocessing tools for oligonucleotide arrays

Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

Usage

justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

Arguments

filenames	character vector with the filenames.
verbose	logical flag for verbosity.
phenoData	a phenoData object or NULL
normalizeToHapmap	Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

Value

SnpQSet or a SnpCnvQSet, depending on the array type.

Examples

## snprmaResults <- justSNPRMA(list.celfiles())

oligo documentation built on Nov. 8, 2020, 6:52 p.m.