SnpSuperSet-class: Class "SnpSuperSet"

In oligoClasses: Classes for high-throughput arrays supported by oligo and crlmm

Description

A class to store locus-level summaries of the quantile normalized intensities, genotype calls, and genotype confidence scores

Objects from the Class

new("SnpSuperSet", allelea=alleleA, alleleB=alleleB, call=call, callProbability, ...).

Slots

assayData:

Object of class "AssayData" ~~

phenoData:

Object of class "AnnotatedDataFrame" ~~

featureData:

Object of class "AnnotatedDataFrame" ~~

experimentData:

Object of class "MIAME" ~~

annotation:

Object of class "character" ~~

protocolData:

Object of class "AnnotatedDataFrame" ~~

.__classVersion__:

Object of class "Versions" ~~

Extends

Class "AlleleSet", directly. Class "SnpSet", directly. Class "eSet", by class "AlleleSet", distance 2. Class "VersionedBiobase", by class "AlleleSet", distance 3. Class "Versioned", by class "AlleleSet", distance 4.

Methods

No methods defined with class "SnpSuperSet" in the signature.

Author(s)

R. Scharpf

See Also

AlleleSet

Examples

showClass("SnpSuperSet")
## empty object from the class
x <- new("matrix")
new("SnpSuperSet", alleleA=x, alleleB=x, call=x, callProbability=x)

oligoClasses documentation built on Nov. 8, 2020, 5:32 p.m.