SnpSuperSet-class: Class "SnpSuperSet"

Description Objects from the Class Slots Extends Methods Author(s) See Also Examples

Description

A class to store locus-level summaries of the quantile normalized intensities, genotype calls, and genotype confidence scores

Objects from the Class

new("SnpSuperSet", allelea=alleleA, alleleB=alleleB, call=call, callProbability, ...).

Slots

assayData:

Object of class "AssayData" ~~

phenoData:

Object of class "AnnotatedDataFrame" ~~

featureData:

Object of class "AnnotatedDataFrame" ~~

experimentData:

Object of class "MIAME" ~~

annotation:

Object of class "character" ~~

protocolData:

Object of class "AnnotatedDataFrame" ~~

.__classVersion__:

Object of class "Versions" ~~

Extends

Class "AlleleSet", directly. Class "SnpSet", directly. Class "eSet", by class "AlleleSet", distance 2. Class "VersionedBiobase", by class "AlleleSet", distance 3. Class "Versioned", by class "AlleleSet", distance 4.

Methods

No methods defined with class "SnpSuperSet" in the signature.

Author(s)

R. Scharpf

See Also

AlleleSet

Examples

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showClass("SnpSuperSet")
## empty object from the class
x <- new("matrix")
new("SnpSuperSet", alleleA=x, alleleB=x, call=x, callProbability=x)

oligoClasses documentation built on Nov. 1, 2018, 2:26 a.m.