SummarizedExperiment-methods: Methods for RangedSummarizedExperiment objects

Description Usage Arguments Details See Also

Description

Methods for RangedSummarizedExperiment.

Usage

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## S4 method for signature 'RangedSummarizedExperiment'
baf(object)
## S4 method for signature 'RangedSummarizedExperiment'
chromosome(object,...)
## S4 method for signature 'RangedSummarizedExperiment'
isSnp(object, ...)
## S4 method for signature 'RangedSummarizedExperiment'
lrr(object)

Arguments

object

A RangedSummarizedExperiment object.

...

ignored

Details

baf and lrr are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

chromosome returns the seqnames of the rowRanges.

isSnp returns a logical vector for each marker in rowRanges indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

See Also

RangedSummarizedExperiment


oligoClasses documentation built on Nov. 1, 2018, 2:26 a.m.