makeFeatureGRanges: Construct a GRanges object from several possible...

Description Usage Arguments Value Author(s) See Also Examples

Description

Construct a GRanges object from several possible feature-level classes. The conversion is useful for subsequent ranged-data queries, such as findOverlaps, countOverlaps, etc.

Usage

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Arguments

object

A gSet-derived object containing chromosome and physical position for the markers on the array.

...

See the makeFeatureGRanges method for GenomeAnnotatedDataFrame.

Value

A GRanges object.

Author(s)

R. Scharpf

See Also

findOverlaps, GRanges, GenomeAnnotatedDataFrame

Examples

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  library(oligoClasses)
	library(GenomicRanges)
	library(Biobase)
	library(foreach)
	registerDoSEQ()
	data(oligoSetExample, package="oligoClasses")
	oligoSet <- oligoSet[chromosome(oligoSet) == 1, ]
  makeFeatureGRanges(oligoSet)

oligoClasses documentation built on Nov. 1, 2018, 2:26 a.m.