Man pages for oncomix
Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data
| exprNmlIsof | Human Breast Cancer RNA-sequencing data from TCGA - Adj.... |
| exprTumIsof | Human Breast Cancer RNA-sequencing data from TCGA - Tumor... |
| mixModelParams | Generate the parameters for two 2-component Gaussian mixture... |
| oncoMixBimodal | Creating a schematic of a 2-component mixture model |
| oncoMixIdeal | Creating an ideal oncomix gene |
| oncoMixTraditionalDE | Creating a schematic of a traditional diff. expression... |
| plotGeneHist | Plot a histogram of gene expression values from tumor and... |
| queryRes | Oncogene Database Mapping Gene Symbol to UCSC ID (kgID) |
| scatterMixPlot | Generate a scatter plot with the output from mixModelParams |
| toMatrix | Convert SummarizedExperiment or Dataframe to Matrix |
| topGeneQuants | Identify genes that meet pre-specified quantiles |
