Man pages for oncomix
Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data

exprNmlIsofHuman Breast Cancer RNA-sequencing data from TCGA - Adj....
exprTumIsofHuman Breast Cancer RNA-sequencing data from TCGA - Tumor...
mixModelParamsGenerate the parameters for two 2-component Gaussian mixture...
oncoMixBimodalCreating a schematic of a 2-component mixture model
oncoMixIdealCreating an ideal oncomix gene
oncoMixTraditionalDECreating a schematic of a traditional diff. expression...
plotGeneHistPlot a histogram of gene expression values from tumor and...
queryResOncogene Database Mapping Gene Symbol to UCSC ID (kgID)
scatterMixPlotGenerate a scatter plot with the output from mixModelParams
toMatrixConvert SummarizedExperiment or Dataframe to Matrix
topGeneQuantsIdentify genes that meet pre-specified quantiles
oncomix documentation built on Oct. 31, 2019, 6:18 a.m.