API for packFinder
de novo Annotation of Pack-TYPE Transposable Elements
| Global functions | |
|---|---|
| alternatePacksToFasta | Source code |
| arabidopsisThalianaRefseq | Man page |
| blastAnalysis | Man page Source code |
| blastAnnotate | Man page Source code |
| checkPermissions | Source code |
| clustTest | Source code |
| collapseSeqs | Man page Source code |
| executeBlast | Source code |
| filterTsdMatches | Source code |
| filterWildcards | Man page Source code |
| getConsensusSeqs | Source code |
| getPackSeqs | Man page Source code |
| getPacksFromCsv | Man page Source code |
| getPacksFromFasta | Man page Source code |
| getPacksFromGRanges | Man page Source code |
| getTsds | Man page Source code |
| identifyPotentialPackElements | Man page Source code |
| identifyTirMatches | Man page Source code |
| initialisePackMatches | Source code |
| makeBlastDb | Man page Source code |
| packAlign | Man page Source code |
| packBlast | Man page Source code |
| packClust | Man page Source code |
| packFinder | Man page |
| packMatches | Man page |
| packSearch | Man page Source code |
| packsToCsv | Man page Source code |
| packsToFasta | Man page Source code |
| packsToGRanges | Man page Source code |
| readBlast | Man page Source code |
| readUc | Man page Source code |
| searchCheck | Source code |
| tirClust | Man page Source code |
